J4_9KDU_003

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9KDU|1|L5|A|2123, 9KDU|1|L5|U|2126, 9KDU|1|L5|A|2127, 9KDU|1|L5|U|2582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|2122
9KDU|1|L5|A|2123
9KDU|1|L5|A|2124
9KDU|1|L5|A|2125
9KDU|1|L5|U|2126
9KDU|1|L5|A|2127
9KDU|1|L5|U|2128
*
9KDU|1|L5|A|2146
9KDU|1|L5|G|2147
9KDU|1|L5|G|2148
*
9KDU|1|L5|C|2578
9KDU|1|L5|A|2579
9KDU|1|L5|U|2580
9KDU|1|L5|G|2581
9KDU|1|L5|U|2582
9KDU|1|L5|U|2583
*
9KDU|1|L5|A|3513
9KDU|1|L5|G|3514

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31