J4_9KMT_003
3D structure
- PDB id
- 9KMT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- GAGUGGAGCCUG*CGCGCUACACUG*CGUGAUGG*CGAGGAAUUCC
- Length
- 43 nucleotides
- Bulged bases
- 9KMT|1|2|U|1225, 9KMT|1|2|C|1230, 9KMT|1|2|U|1530, 9KMT|1|2|U|1535, 9KMT|1|2|G|1598, 9KMT|1|2|G|1603, 9KMT|1|2|G|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMT|1|2|G|1222
9KMT|1|2|A|1223
9KMT|1|2|G|1224
9KMT|1|2|U|1225
9KMT|1|2|G|1226
9KMT|1|2|G|1227
9KMT|1|2|A|1228
9KMT|1|2|G|1229
9KMT|1|2|C|1230
9KMT|1|2|C|1231
9KMT|1|2|U|1232
9KMT|1|2|G|1233
*
9KMT|1|2|C|1525
9KMT|1|2|G|1526
9KMT|1|2|C|1527
9KMT|1|2|G|1528
9KMT|1|2|C|1529
9KMT|1|2|U|1530
9KMT|1|2|A|1531
9KMT|1|2|C|1532
9KMT|1|2|A|1533
9KMT|1|2|C|1534
9KMT|1|2|U|1535
9KMT|1|2|G|1536
*
9KMT|1|2|C|1597
9KMT|1|2|G|1598
9KMT|1|2|U|1599
9KMT|1|2|G|1600
9KMT|1|2|A|1601
9KMT|1|2|U|1602
9KMT|1|2|G|1603
9KMT|1|2|G|1604
*
9KMT|1|2|C|1635
9KMT|1|2|G|1636
9KMT|1|2|A|1637
9KMT|1|2|G|1638
9KMT|1|2|G|1639
9KMT|1|2|A|1640
9KMT|1|2|A|1641
9KMT|1|2|U|1642
9KMT|1|2|U|1643
9KMT|1|2|C|1644
9KMT|1|2|C|1645
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain Z
- Small ribosomal subunit protein eS25
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