J4_9KMT_004
3D structure
- PDB id
- 9KMT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- GCGGCUUAAUUUG*CGGGAAACCUCACCCGGCCCGGAC*GGGUGGUGG*CCCUUAGAUGUCCGGGGCUGCACGC
- Length
- 71 nucleotides
- Bulged bases
- 9KMT|1|2|G|1236, 9KMT|1|2|C|1237, 9KMT|1|2|A|1240, 9KMT|1|2|A|1241, 9KMT|1|2|U|1242, 9KMT|1|2|U|1244, 9KMT|1|2|G|1256, 9KMT|1|2|A|1258, 9KMT|1|2|A|1260, 9KMT|1|2|U|1263, 9KMT|1|2|U|1323, 9KMT|1|2|U|1504, 9KMT|1|2|G|1507, 9KMT|1|2|U|1509, 9KMT|1|2|C|1513, 9KMT|1|2|G|1520, 9KMT|1|2|C|1521, 9KMT|1|2|A|1522, 9KMT|1|2|C|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMT|1|2|G|1233
9KMT|1|2|C|1234
9KMT|1|2|G|1235
9KMT|1|2|G|1236
9KMT|1|2|C|1237
9KMT|1|2|U|1238
9KMT|1|2|U|1239
9KMT|1|2|A|1240
9KMT|1|2|A|1241
9KMT|1|2|U|1242
9KMT|1|2|U|1243
9KMT|1|2|U|1244
9KMT|1|2|G|1245
*
9KMT|1|2|C|1254
9KMT|1|2|G|1255
9KMT|1|2|G|1256
9KMT|1|2|G|1257
9KMT|1|2|A|1258
9KMT|1|2|A|1259
9KMT|1|2|A|1260
9KMT|1|2|C|1261
9KMT|1|2|C|1262
9KMT|1|2|U|1263
9KMT|1|2|C|1264
9KMT|1|2|A|1265
9KMT|1|2|C|1266
9KMT|1|2|C|1267
9KMT|1|2|C|1268
9KMT|1|2|G|1269
9KMT|1|2|G|1270
9KMT|1|2|C|1271
9KMT|1|2|C|1272
9KMT|1|2|C|1273
9KMT|1|2|G|1274
9KMT|1|2|G|1275
9KMT|1|2|A|1276
9KMT|1|2|C|1277
*
9KMT|1|2|G|1320
9KMT|1|2|G|1321
9KMT|1|2|G|1322
9KMT|1|2|U|1323
9KMT|1|2|G|1324
9KMT|1|2|G|1325
9KMT|1|2|U|1326
9KMT|1|2|G|1327
9KMT|1|2|G|1328
*
9KMT|1|2|C|1501
9KMT|1|2|C|1502
9KMT|1|2|C|1503
9KMT|1|2|U|1504
9KMT|1|2|U|1505
9KMT|1|2|A|1506
9KMT|1|2|G|1507
9KMT|1|2|A|1508
9KMT|1|2|U|1509
9KMT|1|2|G|1510
9KMT|1|2|U|1511
9KMT|1|2|C|1512
9KMT|1|2|C|1513
9KMT|1|2|G|1514
9KMT|1|2|G|1515
9KMT|1|2|G|1516
9KMT|1|2|G|1517
9KMT|1|2|C|1518
9KMT|1|2|U|1519
9KMT|1|2|G|1520
9KMT|1|2|C|1521
9KMT|1|2|A|1522
9KMT|1|2|C|1523
9KMT|1|2|G|1524
9KMT|1|2|C|1525
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain K
- Small ribosomal subunit protein eS10
- Chain M
- Small ribosomal subunit protein eS12
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
- Chain n
- ORF1ab polyprotein
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