J4_9KMV_003
3D structure
- PDB id
- 9KMV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GAGUGGAGCCUG*CGCGCUACACUG*CGUGAUGG*CGAGGAAUUCC
- Length
- 43 nucleotides
- Bulged bases
- 9KMV|1|2|A|1228, 9KMV|1|2|G|1229, 9KMV|1|2|C|1230, 9KMV|1|2|U|1530, 9KMV|1|2|C|1534, 9KMV|1|2|U|1535, 9KMV|1|2|G|1603, 9KMV|1|2|G|1636, 9KMV|1|2|A|1637, 9KMV|1|2|G|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMV|1|2|G|1222
9KMV|1|2|A|1223
9KMV|1|2|G|1224
9KMV|1|2|U|1225
9KMV|1|2|G|1226
9KMV|1|2|G|1227
9KMV|1|2|A|1228
9KMV|1|2|G|1229
9KMV|1|2|C|1230
9KMV|1|2|C|1231
9KMV|1|2|U|1232
9KMV|1|2|G|1233
*
9KMV|1|2|C|1525
9KMV|1|2|G|1526
9KMV|1|2|C|1527
9KMV|1|2|G|1528
9KMV|1|2|C|1529
9KMV|1|2|U|1530
9KMV|1|2|A|1531
9KMV|1|2|C|1532
9KMV|1|2|A|1533
9KMV|1|2|C|1534
9KMV|1|2|U|1535
9KMV|1|2|G|1536
*
9KMV|1|2|C|1597
9KMV|1|2|G|1598
9KMV|1|2|U|1599
9KMV|1|2|G|1600
9KMV|1|2|A|1601
9KMV|1|2|U|1602
9KMV|1|2|G|1603
9KMV|1|2|G|1604
*
9KMV|1|2|C|1635
9KMV|1|2|G|1636
9KMV|1|2|A|1637
9KMV|1|2|G|1638
9KMV|1|2|G|1639
9KMV|1|2|A|1640
9KMV|1|2|A|1641
9KMV|1|2|U|1642
9KMV|1|2|U|1643
9KMV|1|2|C|1644
9KMV|1|2|C|1645
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain Z
- Small ribosomal subunit protein eS25
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