J4_9KMX_002
3D structure
- PDB id
- 9KMX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9KMX|1|2|A|672, 9KMX|1|2|A|1083, 9KMX|1|2|C|1085, 9KMX|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMX|1|2|A|671
9KMX|1|2|A|672
9KMX|1|2|G|673
*
9KMX|1|2|C|1032
9KMX|1|2|G|1033
9KMX|1|2|A|1034
9KMX|1|2|A|1035
9KMX|1|2|A|1036
9KMX|1|2|G|1037
*
9KMX|1|2|C|1078
9KMX|1|2|C|1079
9KMX|1|2|A|1080
9KMX|1|2|U|1081
9KMX|1|2|A|1082
9KMX|1|2|A|1083
9KMX|1|2|A|1084
9KMX|1|2|C|1085
9KMX|1|2|G|1086
9KMX|1|2|A|1087
9KMX|1|2|U|1088
9KMX|1|2|G|1089
*
9KMX|1|2|U|1160
9KMX|1|2|U|1161
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain O
- Small ribosomal subunit protein uS11
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- Small ribosomal subunit protein uS12
- Chain a
- Small ribosomal subunit protein eS26
- Chain h
- Small ribosomal subunit protein eS32
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