J4_9KMZ_003
3D structure
- PDB id
- 9KMZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UGGAGC*GCUACACUG*CGUGAUGG*CGAGGAA
- Length
- 30 nucleotides
- Bulged bases
- 9KMZ|1|2|G|1226, 9KMZ|1|2|U|1535, 9KMZ|1|2|U|1599, 9KMZ|1|2|A|1601, 9KMZ|1|2|U|1602, 9KMZ|1|2|G|1603, 9KMZ|1|2|G|1639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMZ|1|2|U|1225
9KMZ|1|2|G|1226
9KMZ|1|2|G|1227
9KMZ|1|2|A|1228
9KMZ|1|2|G|1229
9KMZ|1|2|C|1230
*
9KMZ|1|2|G|1528
9KMZ|1|2|C|1529
9KMZ|1|2|U|1530
9KMZ|1|2|A|1531
9KMZ|1|2|C|1532
9KMZ|1|2|A|1533
9KMZ|1|2|C|1534
9KMZ|1|2|U|1535
9KMZ|1|2|G|1536
*
9KMZ|1|2|C|1597
9KMZ|1|2|G|1598
9KMZ|1|2|U|1599
9KMZ|1|2|G|1600
9KMZ|1|2|A|1601
9KMZ|1|2|U|1602
9KMZ|1|2|G|1603
9KMZ|1|2|G|1604
*
9KMZ|1|2|C|1635
9KMZ|1|2|G|1636
9KMZ|1|2|A|1637
9KMZ|1|2|G|1638
9KMZ|1|2|G|1639
9KMZ|1|2|A|1640
9KMZ|1|2|A|1641
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain Z
- Small ribosomal subunit protein eS25
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