J4_9KN0_003

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAGUGG*CACUG*CGUGAUGG*CGAGGAAUUC

Length

29 nucleotides

Bulged bases

9KN0|1|2|U|1535, 9KN0|1|2|U|1602, 9KN0|1|2|G|1603, 9KN0|1|2|G|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|G|1222
9KN0|1|2|A|1223
9KN0|1|2|G|1224
9KN0|1|2|U|1225
9KN0|1|2|G|1226
9KN0|1|2|G|1227
*
9KN0|1|2|C|1532
9KN0|1|2|A|1533
9KN0|1|2|C|1534
9KN0|1|2|U|1535
9KN0|1|2|G|1536
*
9KN0|1|2|C|1597
9KN0|1|2|G|1598
9KN0|1|2|U|1599
9KN0|1|2|G|1600
9KN0|1|2|A|1601
9KN0|1|2|U|1602
9KN0|1|2|G|1603
9KN0|1|2|G|1604
*
9KN0|1|2|C|1635
9KN0|1|2|G|1636
9KN0|1|2|A|1637
9KN0|1|2|G|1638
9KN0|1|2|G|1639
9KN0|1|2|A|1640
9KN0|1|2|A|1641
9KN0|1|2|U|1642
9KN0|1|2|U|1643
9KN0|1|2|C|1644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain Z

Small ribosomal subunit protein eS25