J4_9KZX_004

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9KZX|1|L5|A|2366, 9KZX|1|L5|U|2369, 9KZX|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|2365
9KZX|1|L5|A|2366
9KZX|1|L5|A|2367
9KZX|1|L5|A|2368
9KZX|1|L5|U|2369
9KZX|1|L5|A|2370
9KZX|1|L5|U|2371
*
9KZX|1|L5|A|2389
9KZX|1|L5|G|2390
9KZX|1|L5|G|2391
*
9KZX|1|L5|C|2824
9KZX|1|L5|A|2825
9KZX|1|L5|U|2826
9KZX|1|L5|G|2827
9KZX|1|L5|U|2828
9KZX|1|L5|U|2829
*
9KZX|1|L5|A|3856
9KZX|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31