J4_9KZX_009

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9KZX|1|L5|U|3773, 9KZX|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|3696
9KZX|1|L5|U|3697
9KZX|1|L5|G|3698
*
9KZX|1|L5|C|3752
9KZX|1|L5|G|3753
*
9KZX|1|L5|C|3771
9KZX|1|L5|U|3772
9KZX|1|L5|U|3773
9KZX|1|L5|A|3774
9KZX|1|L5|A|3775
9KZX|1|L5|G|3776
9KZX|1|L5|G|3777
9KZX|1|L5|U|3778
9KZX|1|L5|A|3779
9KZX|1|L5|G|3780
*
9KZX|1|L5|U|3814
9KZX|1|L5|G|3815
9KZX|1|L5|A|3816
9KZX|1|L5|A|3817
9KZX|1|L5|U|3818
9KZX|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA