J4_9KZX_015

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAC*GA*UUGG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|zz|G|153
9KZX|1|zz|A|154
9KZX|1|zz|A|155
9KZX|1|zz|C|156
*
9KZX|1|zz|G|171
9KZX|1|zz|A|172
*
9KZX|1|zz|U|227
9KZX|1|zz|U|228
9KZX|1|zz|G|229
9KZX|1|zz|G|230
*
9KZX|1|zz|C|238
9KZX|1|zz|C|239

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain SH

40S ribosomal protein S7