J4_9L0R_022

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

CGAAAGUGUGCUUCG*CU*AAA*UUAGUAG

Length

27 nucleotides

Bulged bases

9L0R|1|K|A|457, 9L0R|1|K|U|465, 9L0R|1|K|C|466

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9L0R|1|K|C|453
9L0R|1|K|G|454
9L0R|1|K|A|455
9L0R|1|K|A|456
9L0R|1|K|A|457
9L0R|1|K|G|458
9L0R|1|K|U|459
9L0R|1|K|G|460
9L0R|1|K|U|461
9L0R|1|K|G|462
9L0R|1|K|C|463
9L0R|1|K|U|464
9L0R|1|K|U|465
9L0R|1|K|C|466
9L0R|1|K|G|467
*
9L0R|1|K|C|481
9L0R|1|K|U|482
*
9L0R|1|K|A|508
9L0R|1|K|A|509
9L0R|1|K|A|510
*
9L0R|1|K|U|568
9L0R|1|K|U|569
9L0R|1|K|A|570
9L0R|1|K|G|571
9L0R|1|K|U|572
9L0R|1|K|A|573
9L0R|1|K|G|574

Current chains

Chain K

RNA (700-MER)

Nearby chains

Chain J

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA