J4_9LHK_003

3D structure

PDB id

9LHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Focused asymmetric unit of Env38-Golld RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAAGGUGUCUACAUAGU*GCC*GAUU*AGAGUAG

Length

33 nucleotides

Bulged bases

9LHK|1|G|A|574, 9LHK|1|G|A|584, 9LHK|1|G|U|585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9LHK|1|G|C|570
9LHK|1|G|G|571
9LHK|1|G|A|572
9LHK|1|G|A|573
9LHK|1|G|A|574
9LHK|1|G|G|575
9LHK|1|G|G|576
9LHK|1|G|U|577
9LHK|1|G|G|578
9LHK|1|G|U|579
9LHK|1|G|C|580
9LHK|1|G|U|581
9LHK|1|G|A|582
9LHK|1|G|C|583
9LHK|1|G|A|584
9LHK|1|G|U|585
9LHK|1|G|A|586
9LHK|1|G|G|587
9LHK|1|G|U|588
*
9LHK|1|G|G|604
9LHK|1|G|C|605
9LHK|1|G|C|606
*
9LHK|1|G|G|630
9LHK|1|G|A|631
9LHK|1|G|U|632
9LHK|1|G|U|633
*
9LHK|1|G|A|702
9LHK|1|G|G|703
9LHK|1|G|A|704
9LHK|1|G|G|705
9LHK|1|G|U|706
9LHK|1|G|A|707
9LHK|1|G|G|708

Current chains

Chain G

Env38-Golld RNA

Nearby chains