J4_9LHL_006

3D structure

PDB id

9LHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of Env38-Golld RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAAGGUGUCUACAUAGU*GCC*GAUU*AGAGUAG

Length

33 nucleotides

Bulged bases

9LHL|1|B|A|574, 9LHL|1|B|A|584, 9LHL|1|B|U|585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9LHL|1|B|C|570
9LHL|1|B|G|571
9LHL|1|B|A|572
9LHL|1|B|A|573
9LHL|1|B|A|574
9LHL|1|B|G|575
9LHL|1|B|G|576
9LHL|1|B|U|577
9LHL|1|B|G|578
9LHL|1|B|U|579
9LHL|1|B|C|580
9LHL|1|B|U|581
9LHL|1|B|A|582
9LHL|1|B|C|583
9LHL|1|B|A|584
9LHL|1|B|U|585
9LHL|1|B|A|586
9LHL|1|B|G|587
9LHL|1|B|U|588
*
9LHL|1|B|G|604
9LHL|1|B|C|605
9LHL|1|B|C|606
*
9LHL|1|B|G|630
9LHL|1|B|A|631
9LHL|1|B|U|632
9LHL|1|B|U|633
*
9LHL|1|B|A|702
9LHL|1|B|G|703
9LHL|1|B|A|704
9LHL|1|B|G|705
9LHL|1|B|U|706
9LHL|1|B|A|707
9LHL|1|B|G|708

Current chains

Chain B

Env38-Golld RNA

Nearby chains

Chain A

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA