J4_9LMF_006

3D structure

PDB id

9LMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA 3' domain decamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CGAAAGUGUGCUUCG*CU*AAA*UUAGUAG

Length

27 nucleotides

Bulged bases

9LMF|1|F|U|464, 9LMF|1|F|U|465, 9LMF|1|F|C|466, 9LMF|1|F|A|570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9LMF|1|F|C|453
9LMF|1|F|G|454
9LMF|1|F|A|455
9LMF|1|F|A|456
9LMF|1|F|A|457
9LMF|1|F|G|458
9LMF|1|F|U|459
9LMF|1|F|G|460
9LMF|1|F|U|461
9LMF|1|F|G|462
9LMF|1|F|C|463
9LMF|1|F|U|464
9LMF|1|F|U|465
9LMF|1|F|C|466
9LMF|1|F|G|467
*
9LMF|1|F|C|481
9LMF|1|F|U|482
*
9LMF|1|F|A|508
9LMF|1|F|A|509
9LMF|1|F|A|510
*
9LMF|1|F|U|568
9LMF|1|F|U|569
9LMF|1|F|A|570
9LMF|1|F|G|571
9LMF|1|F|U|572
9LMF|1|F|A|573
9LMF|1|F|G|574

Current chains

Chain F

RNA (700-MER)

Nearby chains