J4_9LTT_001
3D structure
- PDB id
- 9LTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rhizobium etli MprF complexed with Lys-N-tRNA(Lys)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- UUAG*CAG*CGGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 9LTT|1|C|U|8, 9LTT|1|C|U|47, 9LTT|1|C|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9LTT_001 not in the Motif Atlas
- Homologous match to J4_6UFG_001
- Geometric discrepancy: 0.2081
- The information below is about J4_6UFG_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9LTT|1|C|U|7
9LTT|1|C|U|8
9LTT|1|C|A|9
9LTT|1|C|G|10
*
9LTT|1|C|C|25
9LTT|1|C|A|26
9LTT|1|C|G|27
*
9LTT|1|C|C|43
9LTT|1|C|G|44
9LTT|1|C|G|45
9LTT|1|C|G|46
9LTT|1|C|U|47
9LTT|1|C|C|48
9LTT|1|C|G|49
*
9LTT|1|C|C|65
9LTT|1|C|A|66
Current chains
- Chain C
- Lys-N-tRNA(Lys)
Nearby chains
- Chain B
- Hypothetical conserved protein
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