J4_9M0P_011
3D structure
- PDB id
- 9M0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosome in complex with montanine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9M0P|1|S6|U|9, 9M0P|1|S6|U|47, 9M0P|1|S6|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9M0P_011 not in the Motif Atlas
- Homologous match to J4_2ZUE_001
- Geometric discrepancy: 0.3025
- The information below is about J4_2ZUE_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9M0P|1|S6|G|8
9M0P|1|S6|U|9
9M0P|1|S6|G|10
9M0P|1|S6|G|11
*
9M0P|1|S6|U|25
9M0P|1|S6|G|26
9M0P|1|S6|C|27
*
9M0P|1|S6|G|43
9M0P|1|S6|A|44
9M0P|1|S6|G|45
9M0P|1|S6|G|46
9M0P|1|S6|U|47
9M0P|1|S6|C|48
9M0P|1|S6|G|49
*
9M0P|1|S6|C|65
9M0P|1|S6|C|66
Current chains
- Chain S6
- HUMAN INITIATOR MET-TRNA-I|HOMO SAPIENS
Nearby chains
- Chain Lo
- 60S ribosomal protein L36a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: