J4_9MDS_001

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGGAAAG*UAAGUACAAUU*AG*UA

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|A|U|83
9MDS|1|A|G|84
9MDS|1|A|A|85
9MDS|1|A|A|86
9MDS|1|A|G|87
9MDS|1|A|G|88
9MDS|1|A|A|89
9MDS|1|A|A|90
9MDS|1|A|A|91
9MDS|1|A|G|92
*
9MDS|1|A|U|113
9MDS|1|A|A|114
9MDS|1|A|A|115
9MDS|1|A|G|116
9MDS|1|A|U|117
9MDS|1|A|A|118
9MDS|1|A|C|119
9MDS|1|A|A|120
9MDS|1|A|A|121
9MDS|1|A|U|122
9MDS|1|A|U|123
*
9MDS|1|A|A|177
9MDS|1|A|G|178
*
9MDS|1|A|U|195
9MDS|1|A|A|196

Current chains

Chain A

RNA (598-MER)

Nearby chains