J4_9MEE_003

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAGGUGUCUACAUAG*CC*GAUU*AGAGUAG

Length

31 nucleotides

Bulged bases

9MEE|1|A|A|574, 9MEE|1|A|U|585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MEE|1|A|C|570
9MEE|1|A|G|571
9MEE|1|A|A|572
9MEE|1|A|A|573
9MEE|1|A|A|574
9MEE|1|A|G|575
9MEE|1|A|G|576
9MEE|1|A|U|577
9MEE|1|A|G|578
9MEE|1|A|U|579
9MEE|1|A|C|580
9MEE|1|A|U|581
9MEE|1|A|A|582
9MEE|1|A|C|583
9MEE|1|A|A|584
9MEE|1|A|U|585
9MEE|1|A|A|586
9MEE|1|A|G|587
*
9MEE|1|A|C|605
9MEE|1|A|C|606
*
9MEE|1|A|G|630
9MEE|1|A|A|631
9MEE|1|A|U|632
9MEE|1|A|U|633
*
9MEE|1|A|A|702
9MEE|1|A|G|703
9MEE|1|A|A|704
9MEE|1|A|G|705
9MEE|1|A|U|706
9MEE|1|A|A|707
9MEE|1|A|G|708

Current chains

Chain A

GOLLD RNA nanocage

Nearby chains

Chain B

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA