J4_9MOR_002

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MOR_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.2585

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9MOR|1|1|G|297
9MOR|1|1|G|298
9MOR|1|1|A|299
9MOR|1|1|A|300
9MOR|1|1|G|301
*
9MOR|1|1|C|316
9MOR|1|1|G|317
9MOR|1|1|C|318
9MOR|1|1|G|319
*
9MOR|1|1|C|323
9MOR|1|1|A|324
9MOR|1|1|G|325
*
9MOR|1|1|C|337
9MOR|1|1|G|338
9MOR|1|1|U|339
9MOR|1|1|A|340
9MOR|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL4

Chain U

50S ribosomal protein L24