J4_9MOR_014
3D structure
- PDB id
- 9MOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9MOR|1|2|C|576, 9MOR|1|2|A|815, 9MOR|1|2|C|817, 9MOR|1|2|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9MOR_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0779
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9MOR|1|2|G|575
9MOR|1|2|C|576
9MOR|1|2|G|577
*
9MOR|1|2|C|764
9MOR|1|2|G|765
9MOR|1|2|A|766
9MOR|1|2|A|767
9MOR|1|2|A|768
9MOR|1|2|G|769
*
9MOR|1|2|C|810
9MOR|1|2|C|811
9MOR|1|2|G|812
9MOR|1|2|U|813
9MOR|1|2|A|814
9MOR|1|2|A|815
9MOR|1|2|A|816
9MOR|1|2|C|817
9MOR|1|2|G|818
9MOR|1|2|A|819
9MOR|1|2|U|820
9MOR|1|2|G|821
*
9MOR|1|2|C|879
9MOR|1|2|C|880
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- Small ribosomal subunit protein uS8
- Chain q
- Small ribosomal subunit protein uS12
- Chain t
- Small ribosomal subunit protein uS15
- Chain v
- Small ribosomal subunit protein uS17
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