J4_9MQ4_005

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9MQ4|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MQ4_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0966

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9MQ4|1|1|G|1310
9MQ4|1|1|G|1311
9MQ4|1|1|U|1312
9MQ4|1|1|U|1313
9MQ4|1|1|C|1314
*
9MQ4|1|1|G|1338
9MQ4|1|1|G|1339
9MQ4|1|1|U|1340
9MQ4|1|1|G|1341
9MQ4|1|1|A|1342
9MQ4|1|1|G|1343
*
9MQ4|1|1|C|1404
9MQ4|1|1|U|1405
*
9MQ4|1|1|A|1597
9MQ4|1|1|A|1598
9MQ4|1|1|U|1599
9MQ4|1|1|C|1600
9MQ4|1|1|G|1601
9MQ4|1|1|U|1602
9MQ4|1|1|A|1603
9MQ4|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34