J4_9MQ4_008

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MQ4_008 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.071

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9MQ4|1|1|A|1772
9MQ4|1|1|A|1773
9MQ4|1|1|C|1774
9MQ4|1|1|U|1775
9MQ4|1|1|G|1776
*
9MQ4|1|1|C|1788
9MQ4|1|1|A|1789
9MQ4|1|1|C|1790
9MQ4|1|1|A|1791
9MQ4|1|1|G|1792
*
9MQ4|1|1|U|1827
9MQ4|1|1|G|1828
9MQ4|1|1|A|1829
9MQ4|1|1|C|1830
*
9MQ4|1|1|G|1975
9MQ4|1|1|U|1976
9MQ4|1|1|A|1977
9MQ4|1|1|A|1978
9MQ4|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2