J4_9MQ4_009
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9MQ4|1|1|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9MQ4_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0917
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9MQ4|1|1|C|1833
9MQ4|1|1|U|1834
9MQ4|1|1|2MG|1835
*
9MQ4|1|1|C|1905
9MQ4|1|1|G|1906
*
9MQ4|1|1|C|1924
9MQ4|1|1|C|1925
9MQ4|1|1|U|1926
9MQ4|1|1|A|1927
9MQ4|1|1|A|1928
9MQ4|1|1|G|1929
9MQ4|1|1|G|1930
9MQ4|1|1|U|1931
9MQ4|1|1|A|1932
9MQ4|1|1|G|1933
*
9MQ4|1|1|C|1967
9MQ4|1|1|G|1968
9MQ4|1|1|A|1969
9MQ4|1|1|A|1970
9MQ4|1|1|U|1971
9MQ4|1|1|G|1972
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
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