J4_9MTP_018

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

9MTP|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|2A|G|1310
9MTP|1|2A|G|1311
9MTP|1|2A|U|1312
9MTP|1|2A|U|1313
9MTP|1|2A|C|1314
*
9MTP|1|2A|G|1338
9MTP|1|2A|G|1339
9MTP|1|2A|U|1340
9MTP|1|2A|U|1341
9MTP|1|2A|A|1342
9MTP|1|2A|G|1343
*
9MTP|1|2A|C|1404
9MTP|1|2A|U|1405
*
9MTP|1|2A|A|1597
9MTP|1|2A|C|1598
9MTP|1|2A|C|1599
9MTP|1|2A|C|1600
9MTP|1|2A|G|1601
9MTP|1|2A|U|1602
9MTP|1|2A|A|1603
9MTP|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23