J4_9MTP_028
3D structure
- PDB id
- 9MTP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- U(4SU)AA*UAG*UCUAGU*AA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MTP|1|2x|U|7
9MTP|1|2x|4SU|8
9MTP|1|2x|A|9
9MTP|1|2x|A|10
*
9MTP|1|2x|U|25
9MTP|1|2x|A|26
9MTP|1|2x|G|27
*
9MTP|1|2x|U|43
9MTP|1|2x|C|44
9MTP|1|2x|U|45
9MTP|1|2x|A|46
9MTP|1|2x|G|48
9MTP|1|2x|U|49
*
9MTP|1|2x|A|65
9MTP|1|2x|A|66
Current chains
- Chain 2x
- P-site Peptidyl-tRNA fMEAAAKC-tRNAcys RNA-part
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2m
- 30S ribosomal protein S13
- Chain 2w
- Peptide chain release factor 1
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