J4_9MTR_004

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

9MTR|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTR|1|1A|G|1310
9MTR|1|1A|G|1311
9MTR|1|1A|U|1312
9MTR|1|1A|U|1313
9MTR|1|1A|C|1314
*
9MTR|1|1A|G|1338
9MTR|1|1A|G|1339
9MTR|1|1A|U|1340
9MTR|1|1A|U|1341
9MTR|1|1A|A|1342
9MTR|1|1A|G|1343
*
9MTR|1|1A|C|1404
9MTR|1|1A|U|1405
*
9MTR|1|1A|A|1597
9MTR|1|1A|C|1598
9MTR|1|1A|C|1599
9MTR|1|1A|C|1600
9MTR|1|1A|G|1601
9MTR|1|1A|U|1602
9MTR|1|1A|A|1603
9MTR|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23