J4_9MTT_022

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

9MTT|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTT|1|2A|U|1833
9MTT|1|2A|U|1834
9MTT|1|2A|G|1835
*
9MTT|1|2A|C|1905
9MTT|1|2A|G|1906
*
9MTT|1|2A|C|1924
9MTT|1|2A|C|1925
9MTT|1|2A|U|1926
9MTT|1|2A|A|1927
9MTT|1|2A|A|1928
9MTT|1|2A|G|1929
9MTT|1|2A|G|1930
9MTT|1|2A|U|1931
9MTT|1|2A|A|1932
9MTT|1|2A|G|1933
*
9MTT|1|2A|C|1967
9MTT|1|2A|G|1968
9MTT|1|2A|A|1969
9MTT|1|2A|A|1970
9MTT|1|2A|A|1971
9MTT|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA