J4_9N2B_003

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9N2B|1|16|C|576, 9N2B|1|16|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9N2B_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0573

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

9N2B|1|16|G|575
9N2B|1|16|C|576
9N2B|1|16|G|577
*
9N2B|1|16|C|764
9N2B|1|16|G|765
9N2B|1|16|A|766
9N2B|1|16|A|767
9N2B|1|16|A|768
9N2B|1|16|G|769
*
9N2B|1|16|C|810
9N2B|1|16|C|811
9N2B|1|16|G|812
9N2B|1|16|U|813
9N2B|1|16|A|814
9N2B|1|16|A|815
9N2B|1|16|A|816
9N2B|1|16|C|817
9N2B|1|16|G|818
9N2B|1|16|A|819
9N2B|1|16|U|820
9N2B|1|16|G|821
*
9N2B|1|16|C|879
9N2B|1|16|C|880

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SH

30S ribosomal protein S8

Chain SK

Small ribosomal subunit protein uS11

Chain SL

Small ribosomal subunit protein uS12

Chain SO

30S ribosomal protein S15

Chain SQ

30S ribosomal protein S17

Chain SU

30S ribosomal protein S21