J4_9N2B_008
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9N2B|1|23|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N2B_008 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.0512
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9N2B|1|23|G|1310
9N2B|1|23|G|1311
9N2B|1|23|U|1312
9N2B|1|23|U|1313
9N2B|1|23|C|1314
*
9N2B|1|23|G|1338
9N2B|1|23|G|1339
9N2B|1|23|U|1340
9N2B|1|23|G|1341
9N2B|1|23|A|1342
9N2B|1|23|G|1343
*
9N2B|1|23|C|1404
9N2B|1|23|U|1405
*
9N2B|1|23|A|1597
9N2B|1|23|A|1598
9N2B|1|23|U|1599
9N2B|1|23|C|1600
9N2B|1|23|G|1601
9N2B|1|23|U|1602
9N2B|1|23|A|1603
9N2B|1|23|C|1604
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LW
- 50S ribosomal protein L23
- Chain Lh
- 50S ribosomal protein L34
Coloring options: