J4_9N2C_003
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9N2C|1|16|C|576, 9N2C|1|16|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N2C_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0532
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9N2C|1|16|G|575
9N2C|1|16|C|576
9N2C|1|16|G|577
*
9N2C|1|16|C|764
9N2C|1|16|G|765
9N2C|1|16|A|766
9N2C|1|16|A|767
9N2C|1|16|A|768
9N2C|1|16|G|769
*
9N2C|1|16|C|810
9N2C|1|16|C|811
9N2C|1|16|G|812
9N2C|1|16|U|813
9N2C|1|16|A|814
9N2C|1|16|A|815
9N2C|1|16|A|816
9N2C|1|16|C|817
9N2C|1|16|G|818
9N2C|1|16|A|819
9N2C|1|16|U|820
9N2C|1|16|G|821
*
9N2C|1|16|C|879
9N2C|1|16|C|880
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain SH
- 30S ribosomal protein S8
- Chain SL
- Small ribosomal subunit protein uS12
- Chain SO
- 30S ribosomal protein S15
- Chain SQ
- 30S ribosomal protein S17
- Chain SU
- 30S ribosomal protein S21
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