J4_9N2C_006
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 9N2C|1|23|U|653, 9N2C|1|23|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N2C_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.5632
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9N2C|1|23|C|601
9N2C|1|23|A|602
9N2C|1|23|A|603
9N2C|1|23|G|604
*
9N2C|1|23|C|624
9N2C|1|23|G|625
9N2C|1|23|A|626
9N2C|1|23|A|627
9N2C|1|23|G|628
*
9N2C|1|23|C|635
9N2C|1|23|G|636
9N2C|1|23|A|637
9N2C|1|23|G|638
*
9N2C|1|23|C|650
9N2C|1|23|G|651
9N2C|1|23|U|652
9N2C|1|23|U|653
9N2C|1|23|A|654
9N2C|1|23|A|655
9N2C|1|23|G|656
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL4
- Chain LO
- 50S ribosomal protein L15
- Chain Li
- 50S ribosomal protein L35
Coloring options: