J4_9NJF_002

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NJF|1|R1|U|653, 9NJF|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1181

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NJF|1|R1|C|601
9NJF|1|R1|A|602
9NJF|1|R1|A|603
9NJF|1|R1|G|604
*
9NJF|1|R1|C|624
9NJF|1|R1|G|625
9NJF|1|R1|A|626
9NJF|1|R1|A|627
9NJF|1|R1|G|628
*
9NJF|1|R1|C|635
9NJF|1|R1|G|636
9NJF|1|R1|A|637
9NJF|1|R1|G|638
*
9NJF|1|R1|C|650
9NJF|1|R1|G|651
9NJF|1|R1|U|652
9NJF|1|R1|U|653
9NJF|1|R1|A|654
9NJF|1|R1|A|655
9NJF|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4