J4_9NJF_004

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9NJF|1|R1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0968

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|G|1310
9NJF|1|R1|G|1311
9NJF|1|R1|U|1312
9NJF|1|R1|U|1313
9NJF|1|R1|C|1314
*
9NJF|1|R1|G|1338
9NJF|1|R1|G|1339
9NJF|1|R1|U|1340
9NJF|1|R1|G|1341
9NJF|1|R1|A|1342
9NJF|1|R1|G|1343
*
9NJF|1|R1|C|1404
9NJF|1|R1|U|1405
*
9NJF|1|R1|A|1597
9NJF|1|R1|A|1598
9NJF|1|R1|U|1599
9NJF|1|R1|C|1600
9NJF|1|R1|G|1601
9NJF|1|R1|U|1602
9NJF|1|R1|A|1603
9NJF|1|R1|C|1604

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 34

50S ribosomal protein L34