J4_9NJF_008

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9NJF|1|R1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1104

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|C|1833
9NJF|1|R1|U|1834
9NJF|1|R1|G|1835
*
9NJF|1|R1|C|1905
9NJF|1|R1|G|1906
*
9NJF|1|R1|C|1924
9NJF|1|R1|C|1925
9NJF|1|R1|U|1926
9NJF|1|R1|A|1927
9NJF|1|R1|A|1928
9NJF|1|R1|G|1929
9NJF|1|R1|G|1930
9NJF|1|R1|U|1931
9NJF|1|R1|A|1932
9NJF|1|R1|G|1933
*
9NJF|1|R1|C|1967
9NJF|1|R1|G|1968
9NJF|1|R1|A|1969
9NJF|1|R1|A|1970
9NJF|1|R1|U|1971
9NJF|1|R1|G|1972

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA

Chain T

Transfer RNA; tRNA