J4_9NJF_009
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAGGUU*AGCUUGAC*GGU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 9NJF|1|R1|G|2286, 9NJF|1|R1|A|2287, 9NJF|1|R1|A|2288, 9NJF|1|R1|U|2291, 9NJF|1|R1|U|2344, 9NJF|1|R1|A|2346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NJF|1|R1|C|2285
9NJF|1|R1|G|2286
9NJF|1|R1|A|2287
9NJF|1|R1|A|2288
9NJF|1|R1|G|2289
9NJF|1|R1|G|2290
9NJF|1|R1|U|2291
9NJF|1|R1|U|2292
*
9NJF|1|R1|A|2340
9NJF|1|R1|G|2341
9NJF|1|R1|C|2342
9NJF|1|R1|U|2343
9NJF|1|R1|U|2344
9NJF|1|R1|G|2345
9NJF|1|R1|A|2346
9NJF|1|R1|C|2347
*
9NJF|1|R1|G|2370
9NJF|1|R1|G|2371
9NJF|1|R1|U|2372
*
9NJF|1|R1|A|2381
9NJF|1|R1|G|2382
9NJF|1|R1|G|2383
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 18
- Large ribosomal subunit protein uL18
- Chain 27
- 50S ribosomal protein L27
- Chain 33
- Large ribosomal subunit protein bL33
- Chain 35
- Large ribosomal subunit protein bL35
- Chain 5
- 50S ribosomal protein L5
- Chain R2
- 5S ribosomal RNA; 5S rRNA
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: