J4_9NJF_013
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9NJF|1|R3|C|576, 9NJF|1|R3|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NJF_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0782
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NJF|1|R3|G|575
9NJF|1|R3|C|576
9NJF|1|R3|G|577
*
9NJF|1|R3|C|764
9NJF|1|R3|G|765
9NJF|1|R3|A|766
9NJF|1|R3|A|767
9NJF|1|R3|A|768
9NJF|1|R3|G|769
*
9NJF|1|R3|C|810
9NJF|1|R3|C|811
9NJF|1|R3|G|812
9NJF|1|R3|U|813
9NJF|1|R3|A|814
9NJF|1|R3|A|815
9NJF|1|R3|A|816
9NJF|1|R3|C|817
9NJF|1|R3|G|818
9NJF|1|R3|A|819
9NJF|1|R3|U|820
9NJF|1|R3|G|821
*
9NJF|1|R3|C|879
9NJF|1|R3|C|880
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain sh
- 30S ribosomal protein S8
- Chain sl
- Small ribosomal subunit protein uS12
- Chain so
- Small ribosomal subunit protein uS15
- Chain sq
- Small ribosomal subunit protein uS17
- Chain su
- Small ribosomal subunit protein bS21
Coloring options: