J4_9NJF_014
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUAG*CAC*GGGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 9NJF|1|T|U|8, 9NJF|1|T|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NJF_014 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.2417
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9NJF|1|T|U|7
9NJF|1|T|U|8
9NJF|1|T|A|9
9NJF|1|T|G|10
*
9NJF|1|T|C|25
9NJF|1|T|A|26
9NJF|1|T|C|27
*
9NJF|1|T|G|43
9NJF|1|T|G|44
9NJF|1|T|G|45
9NJF|1|T|G|46
9NJF|1|T|U|47
9NJF|1|T|C|48
9NJF|1|T|G|49
*
9NJF|1|T|C|65
9NJF|1|T|A|66
Current chains
- Chain T
- tRNA
Nearby chains
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain R3
- Small subunit ribosomal RNA; SSU rRNA
- Chain sm
- 30S ribosomal protein S13
Coloring options: