J4_9NKL_001

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAGUGUGUUUCGACACACUAUCAU*AAUGAGG

Length

45 nucleotides

Bulged bases

9NKL|1|R1|U|50, 9NKL|1|R1|U|138, 9NKL|1|R1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R1|C|47
9NKL|1|R1|G|48
9NKL|1|R1|A|49
9NKL|1|R1|U|50
9NKL|1|R1|G|51
9NKL|1|R1|A|52
9NKL|1|R1|A|53
9NKL|1|R1|G|54
*
9NKL|1|R1|C|116
9NKL|1|R1|G|117
9NKL|1|R1|A|118
9NKL|1|R1|A|119
9NKL|1|R1|U|120
9NKL|1|R1|G|121
*
9NKL|1|R1|C|130
9NKL|1|R1|A|131
9NKL|1|R1|G|132
9NKL|1|R1|U|133
9NKL|1|R1|G|134
9NKL|1|R1|U|135
9NKL|1|R1|G|136
9NKL|1|R1|U|137
9NKL|1|R1|U|138
9NKL|1|R1|U|139
9NKL|1|R1|C|140
9NKL|1|R1|G|141
9NKL|1|R1|A|142
9NKL|1|R1|C|143
9NKL|1|R1|A|144
9NKL|1|R1|C|145
9NKL|1|R1|A|146
9NKL|1|R1|C|147
9NKL|1|R1|U|148
9NKL|1|R1|A|149
9NKL|1|R1|U|150
9NKL|1|R1|C|151
9NKL|1|R1|A|152
9NKL|1|R1|U|153
*
9NKL|1|R1|A|172
9NKL|1|R1|A|173
9NKL|1|R1|U|174
9NKL|1|R1|G|175
9NKL|1|R1|A|176
9NKL|1|R1|G|177
9NKL|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 28

50S ribosomal protein L28

Chain 34

50S ribosomal protein L34