J4_9NKL_003

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NKL|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NKL_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.164

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NKL|1|R1|C|601
9NKL|1|R1|A|602
9NKL|1|R1|A|603
9NKL|1|R1|G|604
*
9NKL|1|R1|C|624
9NKL|1|R1|G|625
9NKL|1|R1|A|626
9NKL|1|R1|A|627
9NKL|1|R1|G|628
*
9NKL|1|R1|C|635
9NKL|1|R1|G|636
9NKL|1|R1|A|637
9NKL|1|R1|G|638
*
9NKL|1|R1|C|650
9NKL|1|R1|G|651
9NKL|1|R1|U|652
9NKL|1|R1|U|653
9NKL|1|R1|A|654
9NKL|1|R1|A|655
9NKL|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4