3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
9NKL|1|R1|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9NKL_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.1117
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9NKL|1|R1|G|1310
9NKL|1|R1|G|1311
9NKL|1|R1|U|1312
9NKL|1|R1|U|1313
9NKL|1|R1|C|1314
*
9NKL|1|R1|G|1338
9NKL|1|R1|G|1339
9NKL|1|R1|U|1340
9NKL|1|R1|G|1341
9NKL|1|R1|A|1342
9NKL|1|R1|G|1343
*
9NKL|1|R1|C|1404
9NKL|1|R1|U|1405
*
9NKL|1|R1|A|1597
9NKL|1|R1|A|1598
9NKL|1|R1|U|1599
9NKL|1|R1|C|1600
9NKL|1|R1|G|1601
9NKL|1|R1|U|1602
9NKL|1|R1|A|1603
9NKL|1|R1|C|1604

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 23
Large ribosomal subunit protein uL23
Chain 34
50S ribosomal protein L34

Coloring options:


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