J4_9NL5_001

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAGUGUGUUUCGACACACUAUCAU*AAUGAGG

Length

45 nucleotides

Bulged bases

9NL5|1|R1|U|50, 9NL5|1|R1|U|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|C|47
9NL5|1|R1|G|48
9NL5|1|R1|A|49
9NL5|1|R1|U|50
9NL5|1|R1|G|51
9NL5|1|R1|A|52
9NL5|1|R1|A|53
9NL5|1|R1|G|54
*
9NL5|1|R1|C|116
9NL5|1|R1|G|117
9NL5|1|R1|A|118
9NL5|1|R1|A|119
9NL5|1|R1|U|120
9NL5|1|R1|G|121
*
9NL5|1|R1|C|130
9NL5|1|R1|A|131
9NL5|1|R1|G|132
9NL5|1|R1|U|133
9NL5|1|R1|G|134
9NL5|1|R1|U|135
9NL5|1|R1|G|136
9NL5|1|R1|U|137
9NL5|1|R1|U|138
9NL5|1|R1|U|139
9NL5|1|R1|C|140
9NL5|1|R1|G|141
9NL5|1|R1|A|142
9NL5|1|R1|C|143
9NL5|1|R1|A|144
9NL5|1|R1|C|145
9NL5|1|R1|A|146
9NL5|1|R1|C|147
9NL5|1|R1|U|148
9NL5|1|R1|A|149
9NL5|1|R1|U|150
9NL5|1|R1|C|151
9NL5|1|R1|A|152
9NL5|1|R1|U|153
*
9NL5|1|R1|A|172
9NL5|1|R1|A|173
9NL5|1|R1|U|174
9NL5|1|R1|G|175
9NL5|1|R1|A|176
9NL5|1|R1|G|177
9NL5|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 28

50S ribosomal protein L28

Chain 34

50S ribosomal protein L34