J4_9NL5_003

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NL5|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL5_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1577

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NL5|1|R1|C|601
9NL5|1|R1|A|602
9NL5|1|R1|A|603
9NL5|1|R1|G|604
*
9NL5|1|R1|C|624
9NL5|1|R1|G|625
9NL5|1|R1|A|626
9NL5|1|R1|A|627
9NL5|1|R1|G|628
*
9NL5|1|R1|C|635
9NL5|1|R1|G|636
9NL5|1|R1|A|637
9NL5|1|R1|G|638
*
9NL5|1|R1|C|650
9NL5|1|R1|G|651
9NL5|1|R1|U|652
9NL5|1|R1|U|653
9NL5|1|R1|A|654
9NL5|1|R1|A|655
9NL5|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4