J4_9NL5_014

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9NL5|1|R3|C|576, 9NL5|1|R3|A|815, 9NL5|1|R3|C|817, 9NL5|1|R3|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL5_014 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0665

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

9NL5|1|R3|G|575
9NL5|1|R3|C|576
9NL5|1|R3|G|577
*
9NL5|1|R3|C|764
9NL5|1|R3|G|765
9NL5|1|R3|A|766
9NL5|1|R3|A|767
9NL5|1|R3|A|768
9NL5|1|R3|G|769
*
9NL5|1|R3|C|810
9NL5|1|R3|C|811
9NL5|1|R3|G|812
9NL5|1|R3|U|813
9NL5|1|R3|A|814
9NL5|1|R3|A|815
9NL5|1|R3|A|816
9NL5|1|R3|C|817
9NL5|1|R3|G|818
9NL5|1|R3|A|819
9NL5|1|R3|U|820
9NL5|1|R3|G|821
*
9NL5|1|R3|C|879
9NL5|1|R3|C|880

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sh

30S ribosomal protein S8

Chain sk

Small ribosomal subunit protein uS11

Chain sl

Small ribosomal subunit protein uS12

Chain so

Small ribosomal subunit protein uS15

Chain sq

Small ribosomal subunit protein uS17

Chain su

Small ribosomal subunit protein bS21