J4_9NL5_015
3D structure
- PDB id
- 9NL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUAG*CAC*GGGGUCGG*UCA
- Length
- 18 nucleotides
- Bulged bases
- 9NL5|1|T|U|8, 9NL5|1|T|U|47, 9NL5|1|T|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NL5|1|T|U|7
9NL5|1|T|U|8
9NL5|1|T|A|9
9NL5|1|T|G|10
*
9NL5|1|T|C|25
9NL5|1|T|A|26
9NL5|1|T|C|27
*
9NL5|1|T|G|43
9NL5|1|T|G|44
9NL5|1|T|G|45
9NL5|1|T|G|46
9NL5|1|T|U|47
9NL5|1|T|C|48
9NL5|1|T|G|49
9NL5|1|T|G|50
*
9NL5|1|T|U|64
9NL5|1|T|C|65
9NL5|1|T|A|66
Current chains
- Chain T
- tRNA
Nearby chains
- Chain 16
- 50S ribosomal protein L16
- Chain 27
- Large ribosomal subunit protein bL27
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain R3
- Small subunit ribosomal RNA; SSU rRNA
- Chain sm
- Small ribosomal subunit protein uS13
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