J4_9NL6_008

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9NL6|1|R1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL6_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1116

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9NL6|1|R1|C|1833
9NL6|1|R1|U|1834
9NL6|1|R1|G|1835
*
9NL6|1|R1|C|1905
9NL6|1|R1|G|1906
*
9NL6|1|R1|C|1924
9NL6|1|R1|C|1925
9NL6|1|R1|U|1926
9NL6|1|R1|A|1927
9NL6|1|R1|A|1928
9NL6|1|R1|G|1929
9NL6|1|R1|G|1930
9NL6|1|R1|U|1931
9NL6|1|R1|A|1932
9NL6|1|R1|G|1933
*
9NL6|1|R1|C|1967
9NL6|1|R1|G|1968
9NL6|1|R1|A|1969
9NL6|1|R1|A|1970
9NL6|1|R1|U|1971
9NL6|1|R1|G|1972

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA

Chain T

Transfer RNA; tRNA