J4_9NLB_001

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAGUGUGUUUCGACACACUAUCAU*AAUGAGG

Length

45 nucleotides

Bulged bases

9NLB|1|R1|U|50, 9NLB|1|R1|U|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLB|1|R1|C|47
9NLB|1|R1|G|48
9NLB|1|R1|A|49
9NLB|1|R1|U|50
9NLB|1|R1|G|51
9NLB|1|R1|A|52
9NLB|1|R1|A|53
9NLB|1|R1|G|54
*
9NLB|1|R1|C|116
9NLB|1|R1|G|117
9NLB|1|R1|A|118
9NLB|1|R1|A|119
9NLB|1|R1|U|120
9NLB|1|R1|G|121
*
9NLB|1|R1|C|130
9NLB|1|R1|A|131
9NLB|1|R1|G|132
9NLB|1|R1|U|133
9NLB|1|R1|G|134
9NLB|1|R1|U|135
9NLB|1|R1|G|136
9NLB|1|R1|U|137
9NLB|1|R1|U|138
9NLB|1|R1|U|139
9NLB|1|R1|C|140
9NLB|1|R1|G|141
9NLB|1|R1|A|142
9NLB|1|R1|C|143
9NLB|1|R1|A|144
9NLB|1|R1|C|145
9NLB|1|R1|A|146
9NLB|1|R1|C|147
9NLB|1|R1|U|148
9NLB|1|R1|A|149
9NLB|1|R1|U|150
9NLB|1|R1|C|151
9NLB|1|R1|A|152
9NLB|1|R1|U|153
*
9NLB|1|R1|A|172
9NLB|1|R1|A|173
9NLB|1|R1|U|174
9NLB|1|R1|G|175
9NLB|1|R1|A|176
9NLB|1|R1|G|177
9NLB|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 28

50S ribosomal protein L28

Chain 34

50S ribosomal protein L34