J4_9NLB_003

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NLB|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLB_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1477

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLB|1|R1|C|601
9NLB|1|R1|A|602
9NLB|1|R1|A|603
9NLB|1|R1|G|604
*
9NLB|1|R1|C|624
9NLB|1|R1|G|625
9NLB|1|R1|A|626
9NLB|1|R1|A|627
9NLB|1|R1|G|628
*
9NLB|1|R1|C|635
9NLB|1|R1|G|636
9NLB|1|R1|A|637
9NLB|1|R1|G|638
*
9NLB|1|R1|C|650
9NLB|1|R1|G|651
9NLB|1|R1|U|652
9NLB|1|R1|U|653
9NLB|1|R1|A|654
9NLB|1|R1|A|655
9NLB|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4