J4_9NLB_005

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9NLB|1|R1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLB_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0914

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9NLB|1|R1|G|1310
9NLB|1|R1|G|1311
9NLB|1|R1|U|1312
9NLB|1|R1|U|1313
9NLB|1|R1|C|1314
*
9NLB|1|R1|G|1338
9NLB|1|R1|G|1339
9NLB|1|R1|U|1340
9NLB|1|R1|G|1341
9NLB|1|R1|A|1342
9NLB|1|R1|G|1343
*
9NLB|1|R1|C|1404
9NLB|1|R1|U|1405
*
9NLB|1|R1|A|1597
9NLB|1|R1|A|1598
9NLB|1|R1|U|1599
9NLB|1|R1|C|1600
9NLB|1|R1|G|1601
9NLB|1|R1|U|1602
9NLB|1|R1|A|1603
9NLB|1|R1|C|1604

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 34

50S ribosomal protein L34