J4_9NLB_015

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UACAAUG*CGUAGUCC*GUCGGAA

Length

26 nucleotides

Bulged bases

9NLB|1|R3|U|1240, 9NLB|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLB|1|R3|U|943
9NLB|1|R3|G|944
9NLB|1|R3|G|945
9NLB|1|R3|A|946
*
9NLB|1|R3|U|1235
9NLB|1|R3|A|1236
9NLB|1|R3|C|1237
9NLB|1|R3|A|1238
9NLB|1|R3|A|1239
9NLB|1|R3|U|1240
9NLB|1|R3|G|1241
*
9NLB|1|R3|C|1296
9NLB|1|R3|G|1297
9NLB|1|R3|U|1298
9NLB|1|R3|A|1299
9NLB|1|R3|G|1300
9NLB|1|R3|U|1301
9NLB|1|R3|C|1302
9NLB|1|R3|C|1303
*
9NLB|1|R3|G|1334
9NLB|1|R3|U|1335
9NLB|1|R3|C|1336
9NLB|1|R3|G|1337
9NLB|1|R3|G|1338
9NLB|1|R3|A|1339
9NLB|1|R3|A|1340

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain E

Energy-dependent translational throttle protein EttA

Chain T

Transfer RNA; tRNA

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9

Chain sm

30S ribosomal protein S13