Loop J4_9NLE

3D structure

PDB id: 9NLE (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: CGAUGAAG*CGAAUG*CAGUGUGUUUCGACACACUAUCAU*AAUGAGG
Length: 45 nucleotides
Bulged bases: 9NLE|1|R1|U|50, 9NLE|1|R1|U|138, 9NLE|1|R1|U|139
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9NLE|1|R1|C|47
9NLE|1|R1|G|48
9NLE|1|R1|A|49
9NLE|1|R1|U|50
9NLE|1|R1|G|51
9NLE|1|R1|A|52
9NLE|1|R1|A|53
9NLE|1|R1|G|54
*
9NLE|1|R1|C|116
9NLE|1|R1|G|117
9NLE|1|R1|A|118
9NLE|1|R1|A|119
9NLE|1|R1|U|120
9NLE|1|R1|G|121
*
9NLE|1|R1|C|130
9NLE|1|R1|A|131
9NLE|1|R1|G|132
9NLE|1|R1|U|133
9NLE|1|R1|G|134
9NLE|1|R1|U|135
9NLE|1|R1|G|136
9NLE|1|R1|U|137
9NLE|1|R1|U|138
9NLE|1|R1|U|139
9NLE|1|R1|C|140
9NLE|1|R1|G|141
9NLE|1|R1|A|142
9NLE|1|R1|C|143
9NLE|1|R1|A|144
9NLE|1|R1|C|145
9NLE|1|R1|A|146
9NLE|1|R1|C|147
9NLE|1|R1|U|148
9NLE|1|R1|A|149
9NLE|1|R1|U|150
9NLE|1|R1|C|151
9NLE|1|R1|A|152
9NLE|1|R1|U|153
*
9NLE|1|R1|A|172
9NLE|1|R1|A|173
9NLE|1|R1|U|174
9NLE|1|R1|G|175
9NLE|1|R1|A|176
9NLE|1|R1|G|177
9NLE|1|R1|G|178

Current chains

Chain R1: 23S ribosomal RNA

Nearby chains

Chain 23: Large ribosomal subunit protein uL23
Chain 28: 50S ribosomal protein L28
Chain 29: Large ribosomal subunit protein uL29
Chain 34: 50S ribosomal protein L34

J4_9NLE_001